PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G112400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 431aa    MW: 47501.7 Da    PI: 5.677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G112400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0588109223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +Cp Cgk+F++  ++  H+r+H
  Brast07G112400.1.p  88 QCPECGKHFKNDKSMFGHLRSH 109
                         7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.26387114IPR007087Zinc finger, C2H2
SMARTSM003550.005487109IPR015880Zinc finger, C2H2-like
PfamPF139120.005588109IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-888109No hitNo description
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-8294321No hitNo description
PfamPF139122.6E-8299323IPR007087Zinc finger, C2H2
SMARTSM003550.023299321IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993299326IPR007087Zinc finger, C2H2
PROSITE patternPS000280301321IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLSHDELKGT NAAAPTFIQE VLHGEVLLSG DDGYAGGKEE VLFGDEYARE DPHKSVEVEE  60
GEILPLNGQE VDHSGQDWEE QGSIGDVQCP ECGKHFKNDK SMFGHLRSHP NRGYKGATPP  120
TKPKKLLPNS DAAIASPVDK ARYSQRDPNL NAYEILAAYV MLTLKSSDDQ AVSVAPDNKR  180
KYESGELDVP EEELVISKSG ADVVLSDDHG SSVADKPGDD VVCRDKHDSA VADMVGADMV  240
LRDEHASSVA GMNAVLHNEH GSSSVVEVPR KAWRKKSKEG REGHRKEKGV PSPKEKRPYI  300
CKHCPAEFPS HQALGGHMAA HNKERRIQAQ IEQAAEEAHL GKIQQSLNRQ EANCGSDESR  360
RASLPLSTRE LLMERYNKLF QEGWQSRQGY MRQHNDSKDG DSPMIAPPVI ARDRHRPLDI  420
DLNVEAPEKE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3JLH50.0A0A0Q3JLH5_BRADI; Uncharacterized protein
STRINGBRADI1G42950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2082455