PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G100900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 165aa    MW: 18126.5 Da    PI: 6.0777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G100900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-055073123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        ++C +Cg +F +    ++H+ + H
  Brast07G100900.1.p 50 FECDICGFTFCTVKAIRKHMLSsH 73
                        89******************9988 PP

2zf-C2H212.20.0005787109123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C++Cgk+F +   L  H  +H
  Brast07G100900.1.p  87 YMCEHCGKRFMSGRALGGHRASH 109
                         89********8888887777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.455078IPR007087Zinc finger, C2H2
PfamPF138943.6E-45073No hitNo description
SMARTSM003554.0E-45073IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.04E-850109No hitNo description
PROSITE patternPS0002805273IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-585113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.21787114IPR007087Zinc finger, C2H2
PfamPF139127.8E-987111IPR007087Zinc finger, C2H2
SMARTSM003550.1287109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAASPNFPRL TLSLSSAGGG DEEPLRYYPW RVKSAHELDD GFIDPLHTSF ECDICGFTFC  60
TVKAIRKHML SSHPDADPVE TPSIRRYMCE HCGKRFMSGR ALGGHRASHR GKKGCLMLSK  120
QEHVEDFPSM AAAAAIGAPP AMVRDFDLNE PAPEEEQEEK DPPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G100900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3KQH71e-62A0A0Q3KQH7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3725723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-09C2H2-like zinc finger protein