PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G091900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-X1
Protein Properties Length: 656aa    MW: 70783.9 Da    PI: 8.2083
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G091900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.97.7e-07228245118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG+H Cq  CH+GpC++C
  Brast07G091900.1.p 228 CGNHDCQDVCHPGPCGEC 245
                         ****************** PP

2zf-NF-X125.62.6e-08286303118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG+H+C+ +CHeG+CppC
  Brast07G091900.1.p 286 CGMHRCKVTCHEGECPPC 303
                         ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.54E-582147No hitNo description
SMARTSM004380.023109127IPR000967Zinc finger, NF-X1-type
PfamPF014224.6111126IPR000967Zinc finger, NF-X1-type
CDDcd060083.81E-11154202No hitNo description
SMARTSM004380.0012164183IPR000967Zinc finger, NF-X1-type
PfamPF014220.019164181IPR000967Zinc finger, NF-X1-type
CDDcd060082.11E-9218261No hitNo description
SMARTSM004385.9E-4228247IPR000967Zinc finger, NF-X1-type
PfamPF014225.6E-5228245IPR000967Zinc finger, NF-X1-type
CDDcd060085.05E-14276324No hitNo description
SMARTSM004383.6E-5286305IPR000967Zinc finger, NF-X1-type
PfamPF014225.8E-7286303IPR000967Zinc finger, NF-X1-type
PfamPF0142212342351IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3301.6E-4455502IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MVRRSAPVWS CGSCFSIFHL PCIRKWARSP ASVSDASDPA SSWRCPGCQS VHDVPARDIA  60
YTCFCGRRRD PPNDLFLTPH SCGEPCSKPL DRTDPAAKGV SPEDVASRCP HVCVLQCHPG  120
PCPPCKAFAP ARPCPCGKQS ITRRCADRST PVTCGQQCEQ PLPCRRHSCQ KICHTGPCGD  180
CEVNFSAQCF CGKKTETLLC GEMVLKGKLS EKDGVFSCSD VCGHHLPCGN HDCQDVCHPG  240
PCGECELVPA KVTTCHCGKT RLQENRVSCL DPIPTCDKVC DKMLPCGMHR CKVTCHEGEC  300
PPCLVRVEQR CRCGSSGQMV ECYKVLKEEF RCNKPCGRKK NCGRHRCKER CKFLVLGKTR  360
GNSSNNVKVH VFCHMVKDKR DAIRLIADRW KLSVQAVGWE PKRFVTVHVT PKSKVPARVL  420
GLKPGVPVSA SHPYFDPLVD MDPRLVVAML DLPRDADVSS LVLRFGGECE LVWLNDKNAL  480
AVFSDPARAA TALRRLDYGS AYQGAAMFCP SSSTQASSSG NIWVAGQRDG GLAAKGSANP  540
WKKASTSEPD PSGDWTVLGQ SPGTGVLGQA PGSVWRRGDT ASQVMGTNRW NALESDAATS  600
LGTSNKHKPP PRGDAGSSAS APRTGAGSSL ETSAGQSVSK LQPDIEVDDW EESCE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G091900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563997.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY591e-142NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2K2DPA60.0A0A2K2DPA6_BRADI; Uncharacterized protein
STRINGBRADI1G44270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.11e-141NF-X-like 1