PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G031200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 640aa    MW: 67148.1 Da    PI: 6.6788
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G031200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.92.1e-1142416172374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevs 88 
                         v +L++cAe + +g++e+a+ +Larl e asp+g +p++Rlaayf+eALa r+a +++++++  pp++ ++ n   ++e + al++++ v+
  Brast07G031200.1.p 241 VCALTACAESLGAGNHEAANYYLARLGESASPSGpTPLHRLAAYFAEALAIRVATTWPHMFHVSPPRHLTDLNdgdEEEDAVALRVLNSVT 331
                         5689************************************************************9999988777888889999999***** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                         Pi++f h+t N+ +l+ ++g+ rvH+iDfdi+qGlQWp+Llq+La+R+ e+p+++RiTgvg+    sk+el+etg rLa++A++lg+ fef
  Brast07G031200.1.p 332 PIPRFLHFTLNERLLRDFDGHGRVHVIDFDIKQGLQWPSLLQSLAARRpEPPAHVRITGVGP----SKHELQETGARLARVAASLGLAFEF 418
                         *********************************************66548888*********....9************************ PP

                GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalf 268
                         +++v+ rled++l++L+vk+gE +aVn+vl+ hrll+++   +    ++L+l +s+ + ++ + e+ea+  n++++  rf++a+++y+a f
  Brast07G031200.1.p 419 HAVVELRLEDVRLWMLHVKRGERVAVNCVLAAHRLLRDESGGA--MAAFLSLARSTGAGLLLLGEHEAEGlNGGRWEPRFARAMRHYAAAF 507
                         **9999******************************6555444..489********************999******************** PP

                GRAS 269 dsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg...yrveees 355
                         d++ +a+l ++s +rik E++ ++rei+n+va ega+r erhe +++Wr+ +e+ GF+++ +++++a+q +++ r+++ +g    rv+ ++
  Brast07G031200.1.p 508 DAVgAAGLDAASPARIKAEEM-FAREIRNAVAFEGADRCERHEGFKQWRRLMEDGGFRNAGFGDREAMQGRMIARMFAPQGnygVRVQGDD 597
                         ***99****************.*******************************************************94444235667555 PP

                GRAS 356 g.slvlgWkdrpLvsvSaWr 374
                         g  l+l W d+pL++vSaW+
  Brast07G031200.1.p 598 GeGLTLQWLDNPLYTVSAWT 617
                         50566**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.824214593IPR005202Transcription factor GRAS
PfamPF035147.3E-112241617IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MLAGCSLSSR HQMSSTAQRL PCGFSKRGGR GGHGDGGAGG GGVPRVAGDG RGGSSGACSF  60
RAHPAPPVTQ AVSWGAATAA AKPEPCVGDG GGGWERRSRA LKRAHDEAAA VEEEEYGAVA  120
RAKRTRMMGG GAGDEVWFHQ SIAGPMMQAA AGGGEEEEEE EAKVFLVPSA AAFPHGMVHA  180
AAAAGGAGTS TLAAAKQEEY SKSPSSHSSS SSGTDGGSSA AMPLATGGSS SQPEREALEL  240
VCALTACAES LGAGNHEAAN YYLARLGESA SPSGPTPLHR LAAYFAEALA IRVATTWPHM  300
FHVSPPRHLT DLNDGDEEED AVALRVLNSV TPIPRFLHFT LNERLLRDFD GHGRVHVIDF  360
DIKQGLQWPS LLQSLAARRP EPPAHVRITG VGPSKHELQE TGARLARVAA SLGLAFEFHA  420
VVELRLEDVR LWMLHVKRGE RVAVNCVLAA HRLLRDESGG AMAAFLSLAR STGAGLLLLG  480
EHEAEGLNGG RWEPRFARAM RHYAAAFDAV GAAGLDAASP ARIKAEEMFA REIRNAVAFE  540
GADRCERHEG FKQWRRLMED GGFRNAGFGD REAMQGRMIA RMFAPQGNYG VRVQGDDGEG  600
LTLQWLDNPL YTVSAWTPAG GGEGSAVSAS TAASHSLQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3927761639374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557108.10.0PREDICTED: scarecrow-like protein 28
TrEMBLI1H1540.0I1H154_BRADI; Uncharacterized protein
STRINGBRADI1G49630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-116GRAS family protein