PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G168500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 104aa    MW: 10904.9 Da    PI: 7.5757
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G168500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-052446123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Brast06G168500.1.p 24 YECSFCKRGFTNAQALGGHMNIH 46
                        99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-72250No hitNo description
PfamPF139127.1E-62348IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5312451IPR007087Zinc finger, C2H2
SMARTSM003550.0092446IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-42448IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEGDGFNKSG SPEESGARRA PAYYECSFCK RGFTNAQALG GHMNIHRKDR AGAGGKSRGA  60
APPAGQQDGA GGDQVHLGLT LGRNEDSRDG LDLELRLGHY PYN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228158.16e-69PREDICTED: uncharacterized protein LOC104581666
TrEMBLI1H2557e-69I1H255_BRADI; Uncharacterized protein
STRINGBRADI1G52490.12e-68(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-14C2H2 family protein