PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G080400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 338aa    MW: 36441.2 Da    PI: 8.3938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-1898148155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aa+a+++a++ l+g
  Brast06G080400.1.p  98 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAARAYDEAARLLRG 148
                         79********.7*********32...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-1798156No hitNo description
PfamPF008473.3E-1298148IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-1998157IPR016177DNA-binding domain
SMARTSM003802.6E-3499162IPR001471AP2/ERF domain
PROSITE profilePS5103220.15299156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-2899156IPR001471AP2/ERF domain
PRINTSPR003674.1E-7100111IPR001471AP2/ERF domain
PRINTSPR003674.1E-7122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPKPPINHPL CQAKQSKDLT DTCLLITSPT FPNSKHTIKT QALPPSHMEL HFQVQPPVLQ  60
LQDYCYYYHH QQEAMAAAAA QAKPTKPRGR KKGGSSHSKF VGVRQRPSGR WVAEIKDTTQ  120
KIRMWLGTFE TAEAAARAYD EAARLLRGAE ARTNFAPRIS PDCPLALRIR GLLHHKKLSK  180
ARSPAASAKI PSSSTPAAMT TTSNSNSSST SSSSSGVSCE GAAKQAVVEA GEVYRPDFGS  240
LGAEELEPWM FEPAALGARF TELDAFVAVD GGCAAQSAAE ESSTPAAAGG MAEFERMKVE  300
RRISASLYAM NGLQEYFDKV FDASACDPLW DLSPLCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1494155971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G080400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741061e-146AK374106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054G17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751948.11e-148ethylene-responsive transcription factor RAP2-11
TrEMBLA0A0Q3JU151e-147A0A0Q3JU15_BRADI; Uncharacterized protein
STRINGBRADI1G23756.11e-136(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-20related to AP2 11