PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G070300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 234aa    MW: 23736.9 Da    PI: 7.9889
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G070300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.4e-3112113197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ +l++l+a+pe +r+++++sl+yeA  r+ +Pv+Gavg+++++++q
  Brast06G070300.1.p  12 SCNGCRVLRKGCNEACVLRPCLhwieaAESQGHATVFVAKFFGRAGLLSFLTAVPEAQRPAVFQSLLYEAAGRTINPVSGAVGLLWAGSWQ 102
                         6*********************9999777889*********************************************************** PP

              DUF260  87 leqlkaelall 97 
                         l++++++++l+
  Brast06G070300.1.p 103 LCEAAVQTVLR 113
                         ****9998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.80611117IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-2612111IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRGIEWAAAG MSCNGCRVLR KGCNEACVLR PCLHWIEAAE SQGHATVFVA KFFGRAGLLS  60
FLTAVPEAQR PAVFQSLLYE AAGRTINPVS GAVGLLWAGS WQLCEAAVQT VLRGGAIGPL  120
PDLAGGVPEG GVGGGDLFAS SARLATAAGC STFSNAKRVT STTRRPQAAP AHQLQDPSCD  180
LGLWLSGPGS PSAAAVAGRK RAGTPSMSSD DDSVTTSGGA GGGREPELLN LFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G070300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546161e-132AK354616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009C16.
GenBankAK3638591e-132AK363859.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019I02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562786.11e-140LOB domain-containing protein 37
SwissprotQ9FN111e-68LBD37_ARATH; LOB domain-containing protein 37
TrEMBLI1GSU51e-139I1GSU5_BRADI; Uncharacterized protein
STRINGBRADI1G22920.11e-140(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-64LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]