PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G256800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 482aa    MW: 52186.7 Da    PI: 6.2288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G256800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-06238259223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C +Cgk F+r  nL+ H++ H
  Brast05G256800.1.p 238 FCAICGKGFKRDANLRMHMKGH 259
                         6*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.31E-5236261No hitNo description
SMARTSM003550.015237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.572237264IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-5238290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
SMARTSM0035579288321IPR015880Zinc finger, C2H2-like
SMARTSM0035543326348IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010044Biological Processresponse to aluminum ion
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MNHSKNLIQE ESADLSSNPL YYKLSSENPM LGTGIQQPFP PFTSPFGDAS STSVPHMDWN  60
PGTMFDNLTF IEEKIRQVKD VIRSMVVNGG QLSAQPGEFV QQQQQQVNAD LTCLIVQLIS  120
TAGSLLPSLK NSSFLSHPPA GQIPNVVDTS SRSVVPNAAF SEEHKEEMHS PDYEELFKGL  180
TDGAVEGIDI DAVLVEKNDV KDGDEGSGAG IDGDILPAGS YELLQLEKDE ILAPHTHFCA  240
ICGKGFKRDA NLRMHMKGHG DEYKSPAALA KPPRDESTDH AAAVVKRYSC PFAGCKRNKL  300
HKSFLPLKTI LCVKNHYKRS HCEKSYTCSR CHAKKFSIMA DLKTHEKHCG QVKWLCSCGT  360
TFSRKDKLFS HVGLFKGHTP SLPAEEPEAS GQVGCAGSRP EPAKVESSMG SSSMWGNFSG  420
NGDAMLGVNG LDGCSDDFLS TPNFGSFGFG QFDGFPEAPS EASLAMLPSD LYRNGEKNGK  480
S*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G256800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809367.10.0LOW QUALITY PROTEIN: zinc finger protein STAR3-like
SwissprotQ2QX401e-138ART1_ORYSJ; Zinc finger protein STAR3
TrEMBLT2HFU20.0T2HFU2_HOLLA; Aluminum resistance transcription factor 1
STRINGPavir.Cb01989.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-127C2H2 family protein
Publications ? help Back to Top
  1. Xia J,Yamaji N,Kasai T,Ma JF
    Plasma membrane-localized transporter for aluminum in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(43): p. 18381-5
    [PMID:20937890]
  2. Tsutsui T,Yamaji N,Feng Ma J
    Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice.
    Plant Physiol., 2011. 156(2): p. 925-31
    [PMID:21502187]
  3. Famoso AN, et al.
    Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping.
    PLoS Genet., 2011. 7(8): p. e1002221
    [PMID:21829395]
  4. Yokosho K,Yamaji N,Ma JF
    An Al-inducible MATE gene is involved in external detoxification of Al in rice.
    Plant J., 2011. 68(6): p. 1061-9
    [PMID:21880027]
  5. Huang CF,Yamaji N,Chen Z,Ma JF
    A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.
    Plant J., 2012. 69(5): p. 857-67
    [PMID:22035218]
  6. Chen ZC,Yamaji N,Motoyama R,Nagamura Y,Ma JF
    Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice.
    Plant Physiol., 2012. 159(4): p. 1624-33
    [PMID:22732245]
  7. Tsutsui T, et al.
    Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice.
    PLoS ONE, 2012. 7(10): p. e48197
    [PMID:23110212]
  8. Chen ZC, et al.
    Adaptation to acidic soil is achieved by increased numbers of cis-acting elements regulating ALMT1 expression in Holcus lanatus.
    Plant J., 2013. 76(1): p. 10-23
    [PMID:23773148]
  9. Xia J,Yamaji N,Ma JF
    A plasma membrane-localized small peptide is involved in rice aluminum tolerance.
    Plant J., 2013. 76(2): p. 345-55
    [PMID:23888867]
  10. Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF
    Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice.
    Plant Cell Physiol., 2016. 57(5): p. 976-85
    [PMID:26872836]
  11. Che J,Yamaji N,Shen RF,Ma JF
    An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.
    Plant J., 2016. 88(1): p. 132-142
    [PMID:27302336]
  12. Yokosho K,Yamaji N,Fujii-Kashino M,Ma JF
    Retrotransposon-Mediated Aluminum Tolerance through Enhanced Expression of the Citrate Transporter OsFRDL4.
    Plant Physiol., 2016. 172(4): p. 2327-2336
    [PMID:27744299]