PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G214200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 519aa    MW: 58731.1 Da    PI: 8.6031
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G214200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.42.9e-1416103399
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++  +d++k + +v+p   ++++ggk   s t++le ++g+  +v++   k  +r+vl++GW+ Fv+ n+++e+ +++F+++g+s+   +
  Brast05G214200.1.p  16 AQM--HDNFKDS-MVIPEWIVNHFGGK--ISGTIKLEAPNGQIHDVRV--AKEMNRTVLQSGWEAFVDVNQIQENFSLMFRRIGTSCL--K 97 
                         555..6666666.****9999777888..6779***************..********************************999999..9 PP

                         EEEE-S CS
                  B3  94 vkvfrk 99 
                         v++f++
  Brast05G214200.1.p  98 VTIFDA 103
                         999986 PP

2B331.82.5e-10219308393
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..SEE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..sef 90 
                          ++++s+v+    lv+pk++a+++   k++s+tl+l  e++  W  ++++r + g+++      +Fv++n+++egD ++F+ + g   ++f
  Brast05G214200.1.p 219 VKMKKSNVNLYPKLVIPKDYARAYFPHKNQSVTLKLP-EKSMDWLCRFCIRPGEGHHL-Y--LCKFVHDNHVREGDLCLFQPMtGVkaTKF 305
                         5788899999999***********7677788777744.57899*****8888887754.3..479****************5423212444 PP

                         ..E CS
                  B3  91 elv 93 
                         ++ 
  Brast05G214200.1.p 306 TFI 308
                         444 PP

3B3482.2e-15367462395
                         EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.S CS
                  B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.s 88 
                           + +s+v+++ + lv++k +a +h  +  es+t+tl+ + g ++W  ++ +r + ++yvl + WkeFv++n+L+e D ++++   +g+ +
  Brast05G214200.1.p 367 VRMFKSNVNRQnAYLVISKGYAIAHFPN--ESQTITLQLPGGkKKWHPRFYIRPGNSGYVLHGQWKEFVRDNRLREEDLCLLQpiIKGKgR 455
                         556677777664789**********855..7789*****99989******77999999*************************53334445 PP

                         EE..EEE CS
                  B3  89 efelvvk 95 
                         +f+ +v+
  Brast05G214200.1.p 456 RFTVMVH 462
                         5555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.33411104IPR003340B3 DNA binding domain
CDDcd100171.54E-1514102No hitNo description
SMARTSM010192.0E-514104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-1716104IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-1316103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-1717105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-13209298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-13210298IPR015300DNA-binding pseudobarrel domain
CDDcd100176.27E-12215313No hitNo description
SMARTSM010190.0024217311IPR003340B3 DNA binding domain
PROSITE profilePS508636.611217315IPR003340B3 DNA binding domain
PfamPF023625.5E-9219313IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-21356452IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-21359463IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-21363462No hitNo description
SMARTSM010198.7E-9365467IPR003340B3 DNA binding domain
PfamPF023621.0E-13365463IPR003340B3 DNA binding domain
PROSITE profilePS5086310.743366467IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSNPCECCKS KVKFIAQMHD NFKDSMVIPE WIVNHFGGKI SGTIKLEAPN GQIHDVRVAK  60
EMNRTVLQSG WEAFVDVNQI QENFSLMFRR IGTSCLKVTI FDANGEERIS CCAGMKKPTY  120
VEKKSTNCAD ISSNSHDGTA QSSDSDGHCR EQGKKPAVES SCDEFSDDSP SESESMESDD  180
LRLSKYYVLS ARCYLTKEQE DEINAFLRKI QPEIPLLVVK MKKSNVNLYP KLVIPKDYAR  240
AYFPHKNQSV TLKLPEKSMD WLCRFCIRPG EGHHLYLCKF VHDNHVREGD LCLFQPMTGV  300
KATKFTFIFH LLSRAGKAGI DSNHGHQETS SKIHYILSGR CQLDEEDEVG IEALVAKIQP  360
EIPLFVVRMF KSNVNRQNAY LVISKGYAIA HFPNESQTIT LQLPGGKKKW HPRFYIRPGN  420
SGYVLHGQWK EFVRDNRLRE EDLCLLQPII KGKGRRFTVM VHLLPKARST SISKDRDGVL  480
GSNSDGTETP DDSNIPGYVL LGSSSRLTSA RRTLWQRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G214200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318791.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A2K2CT070.0A0A2K2CT07_BRADI; Uncharacterized protein
STRINGEMT181700.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-12B3 family protein