PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G182100.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 378aa    MW: 40626.4 Da    PI: 7.1826
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G182100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31e-10179237563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+     l+se+
  Brast05G182100.2.p 179 KRAKRIWANRQSAARSKERKMRYIGELERKVQTLQTEATTLSAQLALLQRDTTGLTSEN 237
                         9***********************************************99998888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-17175239IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.818177240IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.2E-11179234No hitNo description
SuperFamilySSF579594.08E-11179234No hitNo description
PfamPF001703.2E-9179237IPR004827Basic-leucine zipper domain
CDDcd147039.04E-24180229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNKDKARISA DGGGDGLPPQ SSRRAGPSSS TTPPPEYDIS RMPDFPTRNP GHRRAHSEIL  60
SLPDDLDLSA PGGGDGPSLS DENDEELFSM FLDVDKLNSS CGASSEAESS SAAAGGGQAA  120
GMGHGMRPKH QHSQSMDESM SIKTEELVGP PGMDGMSSVE AKKAVSAAKL AELALVDPKR  180
AKRIWANRQS AARSKERKMR YIGELERKVQ TLQTEATTLS AQLALLQRDT TGLTSENSEL  240
KIRLQTMEQQ VHLQDALNDT LKTEVQRLKV ATGQLANGGG MMMNYGGMPQ APHQFGGNQQ  300
MFHNNQTMQS LLATHQLQQL QLHQQPQQQA LRPQHQQQPL HLLQAQQLQR DLKMKGPMGG  360
GQSLWGDGKS SGGSGGI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G182100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3564330.0AK356433.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1034M13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576732.10.0transcription factor RF2a
RefseqXP_014758763.10.0transcription factor RF2a
SwissprotQ69IL41e-158RF2A_ORYSJ; Transcription factor RF2a
TrEMBLI1IRV20.0I1IRV2_BRADI; Uncharacterized protein
STRINGBRADI4G35240.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.16e-56bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]
  5. Ordiz MI,Yang J,Barbazuk WB,Beachy RN
    Functional analysis of the activation domain of RF2a, a rice transcription factor.
    Plant Biotechnol. J., 2010. 8(7): p. 835-44
    [PMID:20408988]