PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G163300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 403aa    MW: 43454.6 Da    PI: 8.4226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G163300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05239258120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Brast05G163300.1.p 239 FSCPVCFKTFNRYNNMQMHM 258
                         89*****************9 PP

2zf-C2H211.10.0013325345323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C  Cgk F  k + ++H +++
  Brast05G163300.1.p 325 CRRCGKAFAVKGDWRTHEKNC 345
                         *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.9E-6239258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64239266IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-6305343No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5310343IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538323343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MENNPYTTFL KNYHQQSTHR RPRYYSFPAT PAPAQAPPPP PLSAYSSLFF PPPQPSTPPP  60
AAPPSPPLRE ALPLLSLAPA ASSHGSTREQ RRRRRGPGSE DDDADQDEVP GPASSSSSNQ  120
RRAGARRLFA DLNSKAASDD DEDPMDVERR GSMAAAEGDV TVALRIGLPS AAAAADHLIS  180
GISPSAAAAA AASRDEEEEE DGGGGVAALG FASTAIGRLN KGQYWIPTPS QILIGPTQFS  240
CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNVDHPR  300
AKPLKDFRTL QTHYKRKHGL KPFLCRRCGK AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK  360
RSLKDHARAF GRGHGALGGG GLDDDDDCGA VSDVEHDDGA GV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568140.0AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576670.11e-178PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-123ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0Q3HR761e-178A0A0Q3HR76_BRADI; Uncharacterized protein
STRINGSi013819m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-107C2H2 family protein