PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G163300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 403aa    MW: 43454.6 Da    PI: 8.4226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G163300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05239258120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Brast05G163300.1.p 239 FSCPVCFKTFNRYNNMQMHM 258
                         89*****************9 PP

2zf-C2H211.10.0013325345323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C  Cgk F  k + ++H +++
  Brast05G163300.1.p 325 CRRCGKAFAVKGDWRTHEKNC 345
                         *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.9E-6239258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64239266IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-6305343No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5310343IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538323343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MENNPYTTFL KNYHQQSTHR RPRYYSFPAT PAPAQAPPPP PLSAYSSLFF PPPQPSTPPP  60
AAPPSPPLRE ALPLLSLAPA ASSHGSTREQ RRRRRGPGSE DDDADQDEVP GPASSSSSNQ  120
RRAGARRLFA DLNSKAASDD DEDPMDVERR GSMAAAEGDV TVALRIGLPS AAAAADHLIS  180
GISPSAAAAA AASRDEEEEE DGGGGVAALG FASTAIGRLN KGQYWIPTPS QILIGPTQFS  240
CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNVDHPR  300
AKPLKDFRTL QTHYKRKHGL KPFLCRRCGK AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK  360
RSLKDHARAF GRGHGALGGG GLDDDDDCGA VSDVEHDDGA GV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G163300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568140.0AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576670.11e-178zinc finger protein WIP2
SwissprotQ9SVY11e-121ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0Q3HR761e-176A0A0Q3HR76_BRADI; Uncharacterized protein
STRINGTraes_5BL_6888AE9CB.11e-169(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]