PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G124900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 160aa    MW: 17566.8 Da    PI: 8.2055
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G124900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.11e-2882139160
         ZF-HD_dimer   1 kekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         +++vrY eC++NhAas+Gg+avDGC+Ef+++ gee  +aalkC ACgCHR+FHRr +++e
  Brast05G124900.1.p  82 CCSVRYGECRRNHAASTGGYAVDGCREFIAD-GEE-GSAALKCVACGCHRSFHRRVQVYE 139
                         5789**************************8.666.5799***************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2564143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.4E-2785136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-2186134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.51987135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSERSCHVCS AYISSLSIGN IASLGEGREE GGYKYAMRWR GLVCAESKLV GSKEADKRKR  60
GHLMMKRLVV LRRCEPILQF RCCSVRYGEC RRNHAASTGG YAVDGCREFI ADGEEGSAAL  120
KCVACGCHRS FHRRVQVYEV AWDYEDDTSS SSSSSSSGD*
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G124900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757155e-74AK375715.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3102E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238164.11e-89zinc-finger homeodomain protein 7 isoform X2
RefseqXP_024310230.12e-89uncharacterized protein LOC100836392 isoform X1
RefseqXP_024310231.12e-89uncharacterized protein LOC100836392 isoform X1
RefseqXP_024310232.12e-89uncharacterized protein LOC100836392 isoform X1
RefseqXP_024310233.12e-89uncharacterized protein LOC100836392 isoform X1
SwissprotQ6ER228e-33MIF3_ORYSJ; Mini zinc finger protein 2
TrEMBLA0A2K2CRA91e-88A0A2K2CRA9_BRADI; Uncharacterized protein
STRINGBRADI4G30227.15e-72(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.12e-24mini zinc finger 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]