PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G123100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 120aa    MW: 13458 Da    PI: 11.3799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G123100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF818e-261160251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rie+ + rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyey+s
  Brast05G123100.1.p 11 RIEDRTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYAS 60
                        8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-33261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.45262IPR002100Transcription factor, MADS-box
CDDcd002652.33E-36363No hitNo description
PRINTSPR004041.6E-27424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-26463IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251158IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVRRGRVELR RIEDRTSRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PAGKLYEYAS  60
SSTLLVPVPS PLAEMSLVWV LFYFLGASSW FRAARSGFLM ARIRGLLVLF GTIPHCIGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-17462260Myocyte-specific enhancer factor 2A
3mu6_B2e-17462260Myocyte-specific enhancer factor 2A
3mu6_C2e-17462260Myocyte-specific enhancer factor 2A
3mu6_D2e-17462260Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G123100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123581e-80DQ512358.1 Triticum aestivum MADS-box transcription factor TaAGL42 (AGL42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181348.14e-35MADS-box transcription factor 51-like
SwissprotQ9XJ611e-32MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A453GD106e-34A0A453GD10_AEGTS; Uncharacterized protein
TrEMBLQ70JQ57e-34Q70JQ5_WHEAT; Putative MADS box-like protein (Fragment)
STRINGBRADI2G59120.26e-34(Brachypodium distachyon)
STRINGTRIUR3_30872-P13e-34(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.14e-25AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]