PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G024000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 285aa    MW: 29607.1 Da    PI: 10.1549
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G024000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.33.4e-35621642103
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                         a+k+ +++++h+kv+gR+RR+R++a caar+F+L+ eLG+ +d++t+eWLl+qa+pai+++tg++s +a+ +   ++s  +a+ s+++ aa
  Brast05G024000.1.p  62 AAKRAPSKDRHSKVEGRGRRIRMPAMCAARVFQLTGELGHRTDGETVEWLLRQAEPAIIAATGSGSLPANYAsI-AASLPAAA-SRASMAA 150
                         6899************************************************************7777754421.22222222.2222222 PP

                 TCP  92 ksaa..kskksqks 103
                         +++   ++ ++q++
  Brast05G024000.1.p 151 TFHGhgHGAPQQQQ 164
                         22221122222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3268168IPR005333Transcription factor, TCP
PROSITE profilePS5136928.29468122IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEQRAAPPRN SSYPRHRFYY VPPAPPAPAP APAPAPAVGR QPSSSTSTAL VAAPEAEKKA  60
VAAKRAPSKD RHSKVEGRGR RIRMPAMCAA RVFQLTGELG HRTDGETVEW LLRQAEPAII  120
AATGSGSLPA NYASIAASLP AAASRASMAA TFHGHGHGAP QQQQEFMGKR YYKELGQPSS  180
LNNGDAECEK KPRMAMMPMA GPMSVWEVGA FWMQPAYGGA GSSSTANAGQ RQFMASSSGG  240
AMAGDIFNYS YYSGRSSTGG EQEGQRRPGS GAGGGEAGHG ASAQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G024000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239285.11e-68transcription factor PCF3
SwissprotQ53PH21e-39PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0Q3HM363e-67A0A0Q3HM36_BRADI; Uncharacterized protein
STRINGBRADI4G24550.11e-64(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.14e-33TCP family protein