PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G250200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 349aa    MW: 37209.2 Da    PI: 8.6489
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G250200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17178211134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Brast04G250200.1.p 178 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211
                         *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-13172212No hitNo description
SMARTSM004014.0E-19172223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268176208IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14176211IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-12177205No hitNo description
PfamPF003202.6E-15178211IPR000679Zinc finger, GATA-type
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSAIYMSQLS TLALMEGDQD RGHFQAFHLP KDPPILFPFM IDSPVEHQGQ GYGDQHLRQQ  60
IFGESSQQFN DHMMMAGGSD VFATPSSYQP TIQSIGSDMI QRSSYNNPYD IKSKQAVSGS  120
TSEWATTTPP VKMRIVRKAA TSDPEGGAAR KPRRRAQANQ AEESHQQQLH GMGVIRVCSD  180
CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMAAAAAT AANGGLTAAA SNGGAVAMVL  240
GTQASNASQA AKPAKKEKRV AADVDRSLPF KKRCKMVDHA AIAITSESVA SIAAPKEDHH  300
HVCEENVAVA ERPSKPGPPA ALFHGFPCDE ITDAAMLLMT LSCGLVHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G250200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571121.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-132CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLI1HYT10.0I1HYT1_BRADI; Uncharacterized protein
STRINGBRADI3G08240.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.19e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]