PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G186500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 493aa    MW: 54216.5 Da    PI: 7.3231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G186500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-056991123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ C+k F r  nL+ H r H
  Brast04G186500.1.p 69 YICEVCHKGFQRDQNLQLHRRGH 91
                        89*******************88 PP

2zf-C2H210.90.0014145167123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC  C+k +  +s+ k H + +
  Brast04G186500.1.p 145 WKCDRCSKKYAVQSDWKAHTKIC 167
                         58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-66891No hitNo description
SMARTSM003550.0386991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7416991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM0035559110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-6140165No hitNo description
SMARTSM00355230145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSSHTSEEES LNNFQQQPKL EAGAAGPSRG DVGVAMPAVK KRRGHPGNPD PDVEVVALSP  60
KTLVATNRYI CEVCHKGFQR DQNLQLHRRG HNLPWKLKQR SSTDAKKKVY VCPEVTCPHH  120
DASRALGDLT GIKKHFSRKH GEKKWKCDRC SKKYAVQSDW KAHTKICGTK EYRCDCGTIF  180
SRKDSFITHR AFCDALAEDN SRVNHSLATM VGSLHGQQDM FSHGVPNLSS SPTDMVANMS  240
SNDHNSDMHL RSLSPYALIT RNTALFSNQM SSKDTGFPLD GSASSYSYMS MNSPYMSATA  300
LLQKAAEMGA KTSQDPISPL LLKGFPNNFS SARDHMDISS GSQGDSLGNS AANSVCMKTA  360
EDDSSYMNGR SNILINSTWT TGMMTPTTVP LIGLMNQPFS MRQEKENPHI FPEIQTQHDR  420
QENISAVGDA GLTQDFLGLG GSGNLDMSSE TYNTDVTALS YSDEQQKTQE HIYSYHQSSL  480
DSNALEKPLW DA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572569.10.0PREDICTED: protein indeterminate-domain 12-like
TrEMBLI1IA330.0I1IA33_BRADI; Uncharacterized protein
STRINGBRADI3G44520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2