PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G177300.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 401aa    MW: 46401.4 Da    PI: 6.1767
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G177300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.6e-2182174181
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                         +Wt ++v++L+ a+ +++e+++ +            ++k++W+ vs  m ergf +sp+qC++k+++lnkryk+++e+ +++ t++ +++ 
  Brast04G177300.3.p  82 KWTSNMVKLLVSAVAYIDEDVEMDYgssrkkkhamlKRKGKWKLVSMSMNERGFAVSPQQCEDKFNDLNKRYKRLTEILGRGtTCQIVENP 172
                         7**************88888885422344567888899*******************************************9668877776 PP

            trihelix  80 py 81 
                         ++
  Brast04G177300.3.p 173 QL 174
                         65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-2080204No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEGNLPPRTL MSGAPSDVEG SFEPHQQQFQ FAQPQLHQGM FPVPANPVQE LSNGVKTSQS  60
DEDDTLHHDR GSKAASQWHR VKWTSNMVKL LVSAVAYIDE DVEMDYGSSR KKKHAMLKRK  120
GKWKLVSMSM NERGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGTTCQIVE NPQLLEGVSL  180
SGKLKEEARK LLSSKHLHYE EMCSYHNHNR LCLLEDPVLQ KSLRLALRSR DDHEKKSSIG  240
DDDEDDQMML SDDDEEDDEF DDDTEVSAED HHHRSHGTER LQLDYDETWS ASHLSEVAAI  300
DMNKMLCERS GSLCAEKDSP GIHEIQIVKQ NLKLKAQMLK FKQRQFKWLR FSKEKDRELE  360
KMRQENEKMR LENERLELEL KLKGLEMGIK PKIVIGDWKW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757160.10.0PREDICTED: uncharacterized protein LOC100828617
TrEMBLA0A0Q3FKL90.0A0A0Q3FKL9_BRADI; Uncharacterized protein
STRINGBRADI3G45300.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-69sequence-specific DNA binding transcription factors