PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G295300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 347aa    MW: 37500 Da    PI: 7.3204
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G295300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-11151209563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         k+++r   NR +A rs +RK  +i eLe+kv++L ae ++L  +l  l    a l +e+
  Brast03G295300.1.p 151 KKAKRIWANRQSAARSKERKMRYISELERKVQTLHAEATTLSTQLALLHRDTAGLSTEN 209
                         899******************************************99998888777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.8E-15147211IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.519149212IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-11151202No hitNo description
PfamPF001701.1E-9151209IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-8151206No hitNo description
CDDcd147033.42E-20152203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MESKSAVPDG GGGGGNGLPP KPSRRDGAAA PESDMSYMPE SPRRGAGHRR AHSETIGGLP  60
DDLDLGVPGG GGGGENEEEL FFMFLDAEKL NDASEESSSC ARPRHHQHSH SMDASSSFDA  120
EQLLGAAAAA AEAKKAMSNA KLAELALVDP KKAKRIWANR QSAARSKERK MRYISELERK  180
VQTLHAEATT LSTQLALLHR DTAGLSTENS ELKMRLQNVE QQVHLQDALN DALKSELQRL  240
RMATGQMGSN VGGMMNFMGP PPPQPFGGNQ PMFHIQSQTA MQPLHHMQIH PHQQQQQQPL  300
LHPLQLQAQQ LLLGQQHAAA PPNPKMKRTI SAPNQWVGGW SESSSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G295300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181798.11e-152transcription factor RF2a-like
RefseqXP_020181799.11e-152transcription factor RF2a-like
SwissprotQ69IL42e-99RF2A_ORYSJ; Transcription factor RF2a
TrEMBLI1I9471e-169I1I947_BRADI; Uncharacterized protein
STRINGBRADI3G41817.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42693868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-68bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]
  5. Ordiz MI,Yang J,Barbazuk WB,Beachy RN
    Functional analysis of the activation domain of RF2a, a rice transcription factor.
    Plant Biotechnol. J., 2010. 8(7): p. 835-44
    [PMID:20408988]