PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G259600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 328aa    MW: 36412.9 Da    PI: 5.5661
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G259600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.15.6e-1928114286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         W++ e+++L++++++++++lrrg+lk+++We+v++             g +++ +qC++k+e+l+kry++++++         s +p+f++
  Brast03G259600.1.p  28 WSHTETMHLLDVYEDRWNKLRRGQLKAQQWEDVAAETtarcgginGGPGQRKTGTQCRHKLEKLRKRYRAEAARPVA------SLWPFFRR 112
                         *************************************999999876677788*******************999886......58****** PP

            trihelix  85 le 86 
                         ++
  Brast03G259600.1.p 113 MD 114
                         98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1826116No hitNo description
SMARTSM005951.0E-635121IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDSDDPRRAP APAGGGATTK KSGPGQPWSH TETMHLLDVY EDRWNKLRRG QLKAQQWEDV  60
AAETTARCGG INGGPGQRKT GTQCRHKLEK LRKRYRAEAA RPVASLWPFF RRMDQLERGP  120
RAALSPPAAA ASDDDDERDE EEDEEGEEEE EDEEGGQQVG EPELVPRNSN HTRSINGILR  180
DGGGGFRGFT SRPPQPQQPQ QQQQPPPPGL TLSNAPPRKR VAYEAFQAQA AADRVKAEEA  240
QADRSGAVAD GPFSDVLRDF SEGLMRLERR RMEVQWEIER GWKEVEARHG RMLQDAQRRI  300
QNTIVAASAS GKKARRDHGS SADDEDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574665.11e-153PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLI1I8101e-153I1I810_BRADI; Uncharacterized protein
STRINGBRADI3G38680.11e-152(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-21Trihelix family protein