PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G238600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 361aa    MW: 40128.6 Da    PI: 8.7668
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G238600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.6e-144099255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                         y+GV++++++gr++A+++d  ++ +    k+ ++++lg +g +e Aa+a++ a++k++g
  Brast03G238600.1.p 40 AYRGVTRHRWTGRFEAHLWDkNTWsQSqrkKKgRQVYLGAYGGEEAAARAYDLAALKYWG 99
                        69******************8888722565447*************************98 PP

2AP250.55.2e-16142193155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +g+W+A+I  ++    +k+ +lg++ t eeAa a++ a+ + +g
  Brast03G238600.1.p 142 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYATQEEAAMAYDIAAIEHRG 193
                         89****99***********99654...4**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-1639109IPR016177DNA-binding domain
PfamPF008471.6E-124099IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-1540108IPR001471AP2/ERF domain
SMARTSM003803.5E-2640113IPR001471AP2/ERF domain
PROSITE profilePS5103220.33640107IPR001471AP2/ERF domain
PRINTSPR003679.0E-64152IPR001471AP2/ERF domain
PRINTSPR003679.0E-689109IPR001471AP2/ERF domain
CDDcd000181.04E-22142203No hitNo description
PfamPF008471.3E-10142192IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17142203IPR016177DNA-binding domain
PROSITE profilePS5103217.78143201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17143202IPR001471AP2/ERF domain
SMARTSM003801.3E-26143207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAKQRTNRAD ADAATVQSTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK  60
NTWSQSQRKK KGRQVYLGAY GGEEAAARAY DLAALKYWGR DTVLNFPVSN YDEELKEMEG  120
QSREEYIGSL RRKSTGFSRG VSKYRGVARH HHNGKWEARI GRVYGNKYLY LGTYATQEEA  180
AMAYDIAAIE HRGLNAVTNF DVSRYINWHR RLCHSDQQLL LGDSITPATN PTIDLEEAMA  240
SDNQDQFLLP SQVTTPPSTS SALGMLLQSP RLKEVIEGSG AASAMAASSE TSWSWSSCSP  300
SPSPPSPSPP APQQRCSFPD DVQTYFGCEG GDGGAEVDTF LFGDLSAYAA PMFQFEQLDV  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572236.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-103AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLI1I7D40.0I1I7D4_BRADI; Uncharacterized protein
STRINGBRADI3G36820.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-96ARIA-interacting double AP2 domain protein