PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G201800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 326aa    MW: 34257.7 Da    PI: 10.2483
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G201800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.41.7e-2261150186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                         +Wt++e+laLiea+r+++e+lr+g+l++++W+ev+ ++        +   +s +qC++k+e+l+kry++++ ++ +r+++   ++p+f  l
  Brast03G201800.1.p  61 CWTHEETLALIEAYRDKWEALRKGNLRAADWDEVAGAVtarcgrFPTATYKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLL 149
                         8*************************************9988877778899************************98443..47****988 PP

            trihelix  86 e 86 
                         +
  Brast03G201800.1.p 150 H 150
                         6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-2260151No hitNo description
SMARTSM005954.0E-469153IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSSSSSPKPD AVSSPELPPL AAPNIAAAAA AAAAAASSSG GMGLSGSAAG VGSGRRLPPP  60
CWTHEETLAL IEAYRDKWEA LRKGNLRAAD WDEVAGAVTA RCGRFPTATY KSGVQCRHKI  120
EKLRKRYRAE RSRSAGRSKG PKWPFFPLLH DLAGGGAPDP SPNPIIKIKP RAGAGGGTPA  180
SPSSPMSSPS SEDAGRSRSL HGLISNGGGG SGLRFTIPKG SRTKPVGVPR DARADRGDED  240
PEAEAMAEVA SALRAVGEGF LRMEERRLEL SLQMEKERMD SEMKRTQTLL DAQQLFVDAF  300
LGKQQPHHKK SKLAAFATAA AMEED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574347.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLI1I6860.0I1I686_BRADI; Uncharacterized protein
STRINGBRADI3G33630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.19e-28Trihelix family protein