PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G103400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 252aa    MW: 26033.6 Da    PI: 6.8468
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G103400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.42.7e-39331331100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf  e+ +++fa+vhk+FGasnv+kll ++p  +r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l
  Brast03G103400.1.p  33 PCGACKFLRRKCVSGCIFAPYFDTEHgAAHFAAVHKVFGASNVSKLLLQIPAPKRLDAVVTICYEAQARIRDPVYGCVSHIFSLQQQVANL 123
                         7*********************998879*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael  l+++
  Brast03G103400.1.p 124 QAELTCLQTH 133
                         ****998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.69632134IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-3933131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSGSTSVGSA SGSGGGGGGG RGIGGSGTVG GGPCGACKFL RRKCVSGCIF APYFDTEHGA  60
AHFAAVHKVF GASNVSKLLL QIPAPKRLDA VVTICYEAQA RIRDPVYGCV SHIFSLQQQV  120
ANLQAELTCL QTHLATLELP APPPFPQQPQ MPMATAPFSI SDLPLLPSNI PSSMDLSSLF  180
DPSMMQSSQQ WAFQQQPQQL QQQPFGPIMG DGSGGSGGGS IGDGDLQALA RELLERQSAG  240
AMPMQPPHTH C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-36301348111LOB family transfactor Ramosa2.1
5ly0_B1e-36301348111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G103400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940771e-118FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571705.11e-111LOB domain-containing protein 30
SwissprotO813232e-71LBD30_ARATH; LOB domain-containing protein 30
TrEMBLI1I3C61e-109I1I3C6_BRADI; Uncharacterized protein
STRINGBRADI3G22510.11e-110(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.19e-64LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]