PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G065800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 146aa    MW: 16344.4 Da    PI: 8.3828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G065800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-052951123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Brast03G065800.1.p 29 YQCSFCRREFRSAQALGGHMNVH 51
                        9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-72655No hitNo description
Gene3DG3DSA:3.30.160.605.0E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3232956IPR007087Zinc finger, C2H2
SMARTSM003550.00392951IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-62952IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MESRSTREAQ PWSYSCSLAT SLAWPPRSYQ CSFCRREFRS AQALGGHMNV HRRDRARLRH  60
GSPPLPSHPA AAANPNPRWA AIPNLNYPPP PPMAPPSLYR PHSRSSKSHE AKARELEVEV  120
NLELGVQCCV EEEDCLDLEL RLGYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-132451229superman protein
2l1o_A3e-132451229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126107e-33CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankAP0149587e-33AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0058737e-33AP005873.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1370C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236493.14e-67PREDICTED: transcriptional regulator SUPERMAN-like
SwissprotQ388953e-23SUP_ARATH; Transcriptional regulator SUPERMAN
TrEMBLA0A0Q3F7P34e-67A0A0Q3F7P3_BRADI; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP11460_0015e-28(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-21C2H2 family protein