PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G376300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 383aa    MW: 41221.3 Da    PI: 6.8416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G376300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.51.4e-07130152123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cgk F+r  nL+ H+r H
  Brast02G376300.1.p 130 HSCNICGKGFKRDTNLRMHMRAH 152
                         79*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-6129152No hitNo description
Gene3DG3DSA:3.30.160.601.9E-6130152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.0E-4130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.404130159IPR007087Zinc finger, C2H2
PROSITE patternPS000280132154IPR007087Zinc finger, C2H2
SMARTSM0035540184217IPR015880Zinc finger, C2H2-like
SMARTSM0035558222245IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEAWDVQSNG RAEAEDGRSA PLTMYLAFLE HKIGHLRGVL CSPAPQHQQV VSAELACIIS  60
QLASIANDLA MDAGTPSSLA SSPSAGTTMD PGVEEERQEP PPPLGSSSPP PSYEVIELER  120
EEILAPPHAH SCNICGKGFK RDTNLRMHMR AHGHGYNNPK EKATTSLPPA PETKTKTKKR  180
PVYYSCPQAG CKRNRSHSSF VPLKTAVCVR NHYRRTHCAK THACRRCGGV KRFAVLADLR  240
THEKHCGRDR WVCSCAVSFS RREKLLAHVA LFPAGAGHSL ALPLPDETTA SAGQCSTDND  300
TVGGGGVSGS GELLLGASGG EAGNMTDDRC FFSDIGMFDD FGCSDVKPSM EEDDGQRGRL  360
SLDFCGFDGF DLFGTHVMNF DF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559181.10.0PREDICTED: zinc finger protein STAR3-like
TrEMBLI1GL410.0I1GL41_BRADI; Uncharacterized protein
STRINGBRADI1G02410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.24e-66C2H2 family protein