PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G341000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 419aa    MW: 43891.5 Da    PI: 4.7518
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G341000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.1e-12227278556
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                         +  rrkq+NRe+ArrsR RK a + eLe  v +L  eN++L  +l   ++++
  Brast02G341000.1.p 227 RLRRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKY 278
                         5679*************************************99988877766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-18223287IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-10224278No hitNo description
PROSITE profilePS5021711.438225279IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-9227278No hitNo description
PfamPF001703.4E-10227277IPR004827Basic-leucine zipper domain
PfamPF124985.6E-47294409IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MERVFSVEEI PDPFWASQPP ASRDSNASTG AGPAAPGEVG GGAMNRCPSE WYFQKFLEEA  60
VLDSPAGGNP SPRAVASGGG VVVGGVEAAE VKQQPAPAPA AAAAATSAVV DPVEFNAMLK  120
QKLEKDLAAV AMWRATGAMP PERFTASSSL PNANFSHIGT INPIGGNVVP VQNQLVGGTS  180
GEQGPHFVQS VDALVKQAAS SSSREQSDDD DMEEDEITGN ANPTDQRLRR RKQSNRESAR  240
RSRSRKAAHL NELEAQVSQL RVENSSLLRR LADVNQKYNG AAVDNRVLKA DVETLRAKVK  300
MAEDSVKRVT GMSALFPPGS DMSSLSMPFT GSPSDATSDA AVPDDLNNYF STNSDVGGSN  360
GYMPEMASSA QEDDDFINGA LAQGKMGRAE SLQRVASLEH LQKRMCGGPG PASSGSTS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G341000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557420.10.0bZIP transcription factor RISBZ2
SwissprotQ7X9A80.0RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLI1GM780.0I1GM78_BRADI; Uncharacterized protein
STRINGBRADI1G05480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-36bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]