PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G235100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 483aa    MW: 54900.9 Da    PI: 9.3895
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G235100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.7e-13371061285
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          ++ +++p+kf++++ggk   s+t+ le+++g+++ v++  +k+ +++  + GW+ F +a++++e+D+++F ++
  Brast02G235100.1.p  37 FRHGMIIPNKFMDHFGGK--ISRTIELESPDGNTYVVEV--SKNLSKTCPRHGWEAFLDAHHIEENDSLLFLFS 106
                         3567********888988..888****************..999999************************865 PP

2B333.38.6e-112303111699
                         EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99 
                         lv+pk +a+eh   +++s+t++l+   ++++W  ++ +rk ++++ l+    +F ++n ++egD++vF+ ++g+ ++f+l+v+++r+
  Brast02G235100.1.p 230 LVIPKGYAAEHF--PHKSQTVILQRcGKNKKWYPRFHIRKDGCAF-LR--LLGFLQDNLVQEGDICVFEpMKGTgRKFSLKVHLLRE 311
                         89*********7..446789***998999*******778887775.66..789****************555889999999999986 PP

3B340.83.8e-133964781799
                         E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +++k +a+++   +++++tl+l   e+++ W+ ++  r ++ +++ ++GW++Fv++n+L+  D+++F+ +++  + +++v ++r+
  Brast02G235100.1.p 396 TISKAYAAKYL--PARGQTLRLLRpERSKIWDAEMHPRIGDAKMLRGAGWRKFVHENRLQFQDICLFQQMKNeGRLTMMVYIIRH 478
                         68899998884..456779999996888*******778888889999*********************88887999999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-1522106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-1324105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.17826130IPR003340B3 DNA binding domain
CDDcd100171.85E-1527103No hitNo description
SMARTSM010190.002928122IPR003340B3 DNA binding domain
PfamPF023628.8E-1238105IPR003340B3 DNA binding domain
PROSITE profilePS508636.583215312IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-11215310IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.15218312IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-10228310IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-10230310No hitNo description
PfamPF023622.0E-9230311IPR003340B3 DNA binding domain
SMARTSM010190.0074388479IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-13396478IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-12396479IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-12396477No hitNo description
PfamPF023624.3E-11396478IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08397479IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSRLESQIQK SCDCCKRYVD HLEGKMKCFQ RHMTADFRHG MIIPNKFMDH FGGKISRTIE  60
LESPDGNTYV VEVSKNLSKT CPRHGWEAFL DAHHIEENDS LLFLFSCAGI KVTCNVQQIS  120
SDYVDVSNSS HADTTKSSGS KEFASCERVH SSHPRKTAKT PAKYSSYEDS GEDTEDIYSE  180
YESSFQLDDL QTPLGCDYVV CQRSALSAVH EEKVTRLLQD KDIRAEAPVL VIPKGYAAEH  240
FPHKSQTVIL QRCGKNKKWY PRFHIRKDGC AFLRLLGFLQ DNLVQEGDIC VFEPMKGTGR  300
KFSLKVHLLR ESIIGGSGPK TVSSPHGKTR VSPATPKRVS TTHGRARANV TPKTRVKKEL  360
EHGPVEPPYM LSAAACLTWE QKKKVERLVD AIQPETISKA YAAKYLPARG QTLRLLRPER  420
SKIWDAEMHP RIGDAKMLRG AGWRKFVHEN RLQFQDICLF QQMKNEGRLT MMVYIIRHKE  480
KR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G235100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232555.10.0B3 domain-containing protein Os03g0620400
SwissprotQ851W51e-135Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A0Q3GTC90.0A0A0Q3GTC9_BRADI; Uncharacterized protein
STRINGBRADI1G14530.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]