PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G079900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 502aa    MW: 52431.6 Da    PI: 9.5052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G079900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055981123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Brast02G079900.1.p 59 FVCEICNKGFQRDQNLQLHRRGH 81
                        89*******************88 PP

2zf-C2H213.30.00025135157123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Brast02G079900.1.p 135 WKCDKCSKKYAVQSDWKAHTKTC 157
                         58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.38E-75881No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355260100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.38E-7130155No hitNo description
SMARTSM00355140135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEAETSSATA ERAVPASSAA LLPPPAPPAK KKRALPGMPD PDAEVIALSP KTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SGKEVRKRVY VCPEPSCVHH DRSRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHTKTCGSR EYRCDCGTLF SRRDSFITHR  180
AFCDALAEES AKARAPPSED GSSAAAAAAP PPLPAAPAPL QQLPPAPAPA PQPQHEEQER  240
EIRAAPEPVV QFTPPMPSPP PVTTGANVSG STSSVSATSQ SLRGSIFAPP SVAQAPPQYA  300
AAKPPSLCLT TDASSSLFSA PLAPPPSPSP HMSATALLQK AAQMGATSSS SSFLRGLGLD  360
VSSSSPASTS SGQQHSQVSF PEGSLPQWPP RLEPEPGPMM SAGLGLGLPY ELTGGPVGNP  420
GELMMGQSSL FSAKPATLDF LGLGMSPTGP SASRGLSVFM QPMGGAIRMA GSGAGAADTF  480
GAGRGAQAKP WERNPSSSPI L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759900.0AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229031.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-141IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLI1H8K20.0I1H8K2_BRADI; Uncharacterized protein
TrEMBLW5DXB10.0W5DXB1_WHEAT; Uncharacterized protein
STRINGBRADI1G71330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-96C2H2-like zinc finger protein