PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G059900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 116aa    MW: 12657.5 Da    PI: 10.5952
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G059900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer729e-23755457
         ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        v+Y +ClkNhA++lGgh +DGC  f+p        ++ +C ACgCHR FHRr +
  Brast02G059900.1.p  7 VKYLDCLKNHAVALGGHRLDGCPQFVPPV-----GDSPNCVACGCHRAFHRRVE 55
                        79*************************93.....3689**************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-11453IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-19754IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-19853IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.776954IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MSNSFIVKYL DCLKNHAVAL GGHRLDGCPQ FVPPVGDSPN CVACGCHRAF HRRVEFEVRV  60
SLAQVQPMQA ASTSAVTTNA PQLGFWRPER RIQHSSTSRS SARRVIKPPR SSTCP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G059900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3P0382e-34A0A0Q3P038_BRADI; Uncharacterized protein
STRINGBRADI1G73020.16e-17(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3716823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60480.13e-16homeobox protein 26