PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G327400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 548aa    MW: 61059.6 Da    PI: 7.3537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G327400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-18205295199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v +  +l lp +f++++  k   ++ ++lede+gr ++ k+   +++++  l++GW++F+  +g+k+gD+vvF+l+++++f 
  Brast01G327400.1.p 205 FIKYMLQSHVIQGFWLGLPCDFCNKYLPK--HDTAIVLEDENGRNYDTKY--LGTKQG--LSAGWRGFAINHGIKVGDIVVFQLVSSTKF- 288
                         8999*******************999433..5568***************..888877..9**********************9987777. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v ++r+
  Brast01G327400.1.p 289 -KVYILRA 295
                         .9998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-21199298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-25200298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-24203294No hitNo description
PROSITE profilePS5086314.043205296IPR003340B3 DNA binding domain
PfamPF023623.7E-16205295IPR003340B3 DNA binding domain
SMARTSM010191.6E-19205296IPR003340B3 DNA binding domain
PfamPF052667.3E-8421534IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAVDQSLKTK RGRPAGAGSP AAKSMSKMEQ KMALVHQRLA LLDSESDKDA DVVPIVKLDE  60
ELATVVDQQS TRIDCDNTDS EEEYVPLRIV RPERGDSAQK RLPCLSQTHD GHNINTATNK  120
RGRPASSQSA KSNKEQKKTL VKPKIALIGS VSTNSSASDK DDHLVPMVSD VNGEKTFASV  180
QGNCGSAMER AKEVQVKLPA EHPSFIKYML QSHVIQGFWL GLPCDFCNKY LPKHDTAIVL  240
EDENGRNYDT KYLGTKQGLS AGWRGFAINH GIKVGDIVVF QLVSSTKFKV YILRANNCST  300
TDGALGLLCL DAGKEKMRKE GSSNPVQSKE DPKLTRVSSK VIHSDSSNLV SESIDGIQFS  360
ESDIDFDNVE SFSNFNITVD SLVIDCKFPD HLRKTYYELC SAQKSFLHKN LLKQINLTLV  420
VGVIMETINI AEGIRALKVH ASSREDFVVW KKTLESFELL GMNVAFLLKR MDHLLSLPDR  480
SRDLAECKEY KEIKLEQAHA KEKIQDLESK MSNMKDTLKK MDVEMEEMES SAKRRDEMVQ  540
RLATAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G327400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754264.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0Q3IC210.0A0A0Q3IC21_BRADI; Uncharacterized protein
STRINGBRADI2G07980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-38B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]