PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G152900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 205aa    MW: 21361.2 Da    PI: 8.991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G152900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-055072123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ Cgk F+++  L  H  +H
  Brast01G152900.1.p 50 FRCSVCGKAFPSHQALGGHKASH 72
                        89*************99998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.0E-124974IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-85072No hitNo description
SMARTSM003550.00685072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8245077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-8102129No hitNo description
SMARTSM003550.65107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411107129IPR007087Zinc finger, C2H2
PfamPF139126.2E-11107130IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MMNVSHDDYV SLCLLALASA QSGGGGGQAV QIGQMQWLQA PTTACSELRF RCSVCGKAFP  60
SHQALGGHKA SHRKRTAPLP VRVISASSSA EETTTASSNT TSGAGKHRCS VCHRSFATGQ  120
ALGGHKRCHY WDGLSVSLSP TATGSGSGIT VRDFDLNLVP ASEMAAAHAG LRGWGEEEEV  180
QSPLPVKKRR LLSSPSLKLS LTTC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687313e-36EU968731.1 Zea mays clone 323782 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754979.11e-109PREDICTED: zinc finger protein ZAT6-like
TrEMBLI1HRB81e-109I1HRB8_BRADI; Uncharacterized protein
STRINGBRADI2G49250.11e-109(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-25salt tolerance zinc finger