PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G051800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 317aa    MW: 34377.3 Da    PI: 8.4785
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G051800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-05289312123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y C+ C+++F++++ L+ H ++ H
  Brast01G051800.1.p 289 YFCNSCNRTFNSSMGLEDHSKMkH 312
                         78*****************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.053289316IPR007087Zinc finger, C2H2
PROSITE patternPS000280291312IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MQDLRFWGVV VKPGETLKCD PGESHYHISQ IVLEANNTKE NVEVFVNVGG RRIMLGTLSV  60
DKHPQVLTDQ VFGKEFELAH SSMTSNICFT GYQFKIMKRS NSSTKEASDV SGDDSDEEVP  120
LAIPLDCNTD DYKNNQATHG VSKLTAPRPA DAPSCIPKAA VQETNSREET EGDHKDKTCA  180
QDPSDDNDSK GSDQDMDHTP KKMKGNKRPA ETPLKTPSAK KTNIASPTVG KKTGSAAGKK  240
SGYVHVATPY PAKQARKISE HVHVATPHPA KHARKTPGNS DKSKQSAGYF CNSCNRTFNS  300
SMGLEDHSKM KHGAAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567378.10.0PREDICTED: histone deacetylase HDT2-like isoform X1
TrEMBLI1HUF10.0I1HUF1_BRADI; Uncharacterized protein
STRINGBRADI2G58250.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-18histone deacetylase 2C