PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G041200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 121aa    MW: 13880.3 Da    PI: 10.8811
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G041200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65e-261160251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rie+ + rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyeyss
  Brast01G041200.1.p 11 RIEDRTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 60
                        8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.03262IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-33261IPR002100Transcription factor, MADS-box
CDDcd002651.07E-34367No hitNo description
SuperFamilySSF554556.15E-27470IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-27424IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251158IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MARRGRVELR RIEDRTSRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PAGKLYEYSS  60
SRCVSTLFDP LINQLLELLF RIYSSYAPVV PRSALRLSNG AGRELRTFFL VLFRTVLDCW  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-16461259Myocyte-specific enhancer factor 2A
3mu6_B2e-16461259Myocyte-specific enhancer factor 2A
3mu6_C2e-16461259Myocyte-specific enhancer factor 2A
3mu6_D2e-16461259Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G041200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693331e-89KF469333.1 Brachypodium distachyon MADS-box transcription factor 39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288309.17e-35agamous-like MADS-box protein AGL14-like
SwissprotQ9XJ616e-33MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A453GCR83e-35A0A453GCR8_AEGTS; Uncharacterized protein
STRINGLPERR01G36730.11e-34(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.18e-27AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]