PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151438.1
Common NameBrLOL1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LSD
Protein Properties Length: 155aa    MW: 15890.5 Da    PI: 7.9164
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1468.4e-153862125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL+YP GA+sV+Ca+C++V
  XP_009151438.1 38 CSGCRNLLMYPVGATSVCCAVCNAV 62
                    ************************9 PP

2zf-LSD146.75.3e-1577101125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     CggC+tlL+Y rGA+sV+C++C+tV
  XP_009151438.1  77 CGGCHTLLMYIRGATSVQCSCCHTV 101
                     ************************9 PP

3zf-LSD136.86.2e-12115139125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C+ lL+Y +GA+sV+Ca+C ++
  XP_009151438.1 115 CGSCKMLLMYQYGARSVKCAVCSFI 139
                     **********************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.7E-143565IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-113862IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.7E-1574103IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1277101IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.3E-11112141IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-11115139IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MPVPLAPYPT PPATPLAPAY TPPSPANGST GGQSQLVCSG CRNLLMYPVG ATSVCCAVCN  60
AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGSCKM  120
LLMYQYGARS VKCAVCSFIT SVGGSTSTTD QKLNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1932950.0AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288950.11e-107protein LOL1
RefseqXP_009151438.11e-107PREDICTED: protein LOL1 isoform X2
RefseqXP_013742645.11e-107PREDICTED: protein LOL1 isoform X2
SwissprotQ93ZB11e-87LOL1_ARATH; Protein LOL1
TrEMBLQ53UG61e-107Q53UG6_BRACM; LSD-One-Like 1
STRINGBra010171.1-P2e-86(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-73lsd one like 1