PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151258.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 341aa    MW: 37913.4 Da    PI: 10.0271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.2e-31275332359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh 
  XP_009151258.1 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDETSMLIVTYEGEHNHA 332
                     9*************************988****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-15234271IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-33261333IPR003657WRKY domain
PROSITE profilePS5081129.333268334IPR003657WRKY domain
SuperFamilySSF1182901.83E-26271332IPR003657WRKY domain
SMARTSM007745.5E-37273333IPR003657WRKY domain
PfamPF031061.9E-26275331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEEVEAANKE AVESCHGVLN LLSQQTSDPK SLLVETREAV IKFKRVTSLL TRGLGGQRKI  60
KKLNNNYYKF MSPLLPQYIF LESPICSNNA ITGCTPVLAP KPLQVIPPAA PSYGEQRPVH  120
PPPMMLNQRM CVDKSFLELK PPSLRAVDQK PYQFIRNHQQ GVYYRSNSGL NLKFDGSGGG  180
GSCYSPSVSN GSRSFVSSLS MDGSVTDYDR NSFHLIGLPQ GSDHMSQHSR RTSCSGSLKC  240
GNKSKCHCSK KRKLRVKRSI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS  300
SVRGCPARKH VERCVDETSM LIVTYEGEHN HARISSQSAH T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20261331271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9124160.0EU912416.1 Brassica napus WRKY74-1 transcription factor (WRKY74-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151258.10.0PREDICTED: probable WRKY transcription factor 74 isoform X1
RefseqXP_009151259.10.0PREDICTED: probable WRKY transcription factor 74 isoform X1
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLM4D0K70.0M4D0K7_BRARP; Uncharacterized protein
STRINGBra010005.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.10.0WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]