PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150558.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 206aa    MW: 23312.5 Da    PI: 5.9458
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.21.4e-27113171159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDgy+WrKYG+K+vk++++ r+YY+C+ +gC+vkk+ver+ ed ++v++tY g Hnhe
  XP_009150558.1 113 MDDGYKWRKYGKKSVKNNTNKRNYYKCSNEGCTVKKRVERDGEDASYVITTYDGVHNHE 171
                     59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-30100173IPR003657WRKY domain
SuperFamilySSF1182903.66E-26105173IPR003657WRKY domain
PROSITE profilePS5081128.793108173IPR003657WRKY domain
SMARTSM007741.1E-30113172IPR003657WRKY domain
PfamPF031067.8E-22114171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNISQNPSPN FPFFSDENFI NPFMDNFDFT DLIFDVNEGG NNNGFIQEET SSPISIVSSE  60
TFTGESGGSG SGITTSSKKE PTFGCKSRGS KDGETKEMGH RVAFRTRSKI DVMDDGYKWR  120
KYGKKSVKNN TNKRNYYKCS NEGCTVKKRV ERDGEDASYV ITTYDGVHNH ESPSHVYYND  180
MVLSYDHDSW NQHSLLQAIQ QISPPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-23103174778Probable WRKY transcription factor 4
2lex_A6e-23103174778Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.288291e-110leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300601e-127KF430060.1 Brassica rapa WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150558.11e-153PREDICTED: probable WRKY transcription factor 51 isoform X1
SwissprotQ93WU91e-109WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A397Z4M11e-152A0A397Z4M1_BRACM; Uncharacterized protein
TrEMBLM4E6C41e-152M4E6C4_BRARP; Uncharacterized protein
STRINGBra024328.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57112747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-97WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]