PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009146703.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 258aa    MW: 28937.9 Da    PI: 7.7994
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009146703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.55.8e-3324135199
                     EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f+k ltpsdv+k++rlv+pk++ae++              +++e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F
  XP_009146703.1  24 FEKSLTPSDVGKLNRLVIPKQHAERYlplnncggggdvtAESTEKGVLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSRYVKDKHLNAGDVVLF 118
                     99*********************************99997777899************************************************* PP

                     EE-SS.SEE..EEEEE-S CS
              B3  83 kldgr.sefelvvkvfrk 99 
                     +++ r +  +l+++++r+
  XP_009146703.1 119 QRH-RfDIHRLFIGWRRR 135
                     *65.44888899999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-4116144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-3120136IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-2923124No hitNo description
SMARTSM010194.7E-2524136IPR003340B3 DNA binding domain
PfamPF023624.1E-3024135IPR003340B3 DNA binding domain
PROSITE profilePS5086313.67624136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSVNHYSNTL SSHNHHNEHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGGD  60
VTAESTEKGV LLSFEDESGK SWKFRYSYWN SSQSYVLTKG WSRYVKDKHL NAGDVVLFQR  120
HRFDIHRLFI GWRRRGEASS SSAVSAVTQD PRANTTAYWN GLTTPYRQVH ASTSSYPNNI  180
HQEYSHYGPV AETPTVAAGS SKTVRLFGVN LECHSDVVEP PPCPDAYNGQ HIYYYSTPHP  240
MNISFAGEAM EQVGDGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-442113511117DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.182920.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895470.0AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146703.10.0PREDICTED: B3 domain-containing protein At3g11580
SwissprotQ8RYD31e-144Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLM4F1820.0M4F182_BRARP; Uncharacterized protein
STRINGBra034828.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-137B3 family protein