PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145512.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 301aa    MW: 33252 Da    PI: 6.7902
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17213248134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  XP_009145512.1 213 CRHCGTSEnsTPMMRRGPEGPRTLCNACGLMWANKG 248
                     *********************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.41167102IPR010399Tify domain
SMARTSM009793.0E-1067102IPR010399Tify domain
PfamPF062003.0E-1172101IPR010399Tify domain
PROSITE profilePS5101713.066137179IPR010402CCT domain
PfamPF062031.6E-15137179IPR010402CCT domain
SMARTSM004012.5E-9207260IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.789207263IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.56E-13210272No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15212254IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.7E-15213248IPR000679Zinc finger, GATA-type
CDDcd002021.04E-15213266No hitNo description
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDDDGSLHGN NGGMHNGGDE LPMHVQYEHH GMMDEHVDDG MNGGLETDVP SHLVNSSDHR  60
GEVVDRGGEN GDQLTLSYQG QVYVFDHVLP EKVQAVLLLL GGREVPQTVP TTVGSPHQNN  120
RVLGLSGTPQ RFSAPQRQAS LLRFREKRKG RNFDKTIRYT VRKEVALRMQ RKKGQFTSAK  180
SSNEESALTG PDWGSGQSWA LEGCETQKPE ALCRHCGTSE NSTPMMRRGP EGPRTLCNAC  240
GLMWANKGAL RDLSKGPPPQ ITRNLPANKN DESNLEADQM MVVAGDNSNS NWEKHCRQEK  300
M
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.112810.0bud| leaf| root| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145512.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL71e-166GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A397ZBR10.0A0A397ZBR1_BRACM; Uncharacterized protein
STRINGBo5g103560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-163ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]