PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145375.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 380aa    MW: 43086.3 Da    PI: 5.9572
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1292.3e-0993135446
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                     +k  rr+++NReAAr+sR+RKka +++Lee   +L++  ++L+
  XP_009145375.1  93 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELA 135
                     7999**************************8888887776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.9E-883136No hitNo description
SMARTSM003380.001190148IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.34792134IPR004827Basic-leucine zipper domain
PfamPF077162.9E-594139IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.44E-694136No hitNo description
PROSITE patternPS00036097112IPR004827Basic-leucine zipper domain
PfamPF141442.8E-28181255IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEMMSSSSSS TTQVVSLREM GMYEPFQQLS GWENAFNTIG TSNQNNNNNP SSSTVPEVEA  60
DDNNKANYTS MYNNSVEAEP SSNNDQDDDQ INDKMKRRLA QNREAARKSR LRKKAHVQQL  120
EESRLKLSQL EQELARARQQ GLCVRNSSDS SYLGPAGTMN TGIAAFEMEY THWLEEQNKR  180
VSEIRTALQA HISDIELKML VDICLNHYAN LFRMKADAAK ADVFFLISGM WRTSTERFFQ  240
WIGGFRPSEL LNVVMPYIEP LTDQQLLEVR NLQQSSQQAE EALSQGLDKL QQGLVENIAV  300
DIRVVESANH GAQMASAMEN LQALEGFVNQ ADHLRKQTLQ QMSKILTTRQ AARGLLALGE  360
YFHRLRALSS LWAARPRERT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.139940.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00157DAPTransfer from AT1G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1100980.0EU110098.1 Brassica juncea bZIP transcription factor (CdR15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145375.10.0PREDICTED: transcription factor TGA3
SwissprotQ392340.0TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A3P5Y3R40.0A0A3P5Y3R4_BRACM; Uncharacterized protein (Fragment)
TrEMBLM4ERE00.0M4ERE0_BRARP; Uncharacterized protein
STRINGBra031364.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.10.0TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  5. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]