PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144258.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 349aa    MW: 38727.4 Da    PI: 6.8541
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.71.1e-3426128189
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas...nsssg... 88 
                     a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+L +d++sk+++WL+++ak+ai++l  t+ ++++++ +++ssss+ +   +   +   
  XP_009144258.1  26 ATGRKDRHSKVFTSKGPRDRRVRLAAHTAIQFYDVQDRLQYDRPSKAVDWLIKKAKAAIDKLETTQEPPENDTtKPGSSSSEPNlvdT---Qtqf 117
                     589**************************************************************99999998644444444432221...1334 PP

             TCP  89 ..........k 89 
                                
  XP_009144258.1 118 vaanldpedaM 128
                     45555554331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3127127IPR005333Transcription factor, TCP
PROSITE profilePS5136930.3462987IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGLKGYSAGD GVGEIIEVPG GHIIRATGRK DRHSKVFTSK GPRDRRVRLA AHTAIQFYDV  60
QDRLQYDRPS KAVDWLIKKA KAAIDKLETT QEPPENDTTK PGSSSSEPNL VDTQTQFVAA  120
NLDPEDAMKT FFPATTTTSG GGTNMNFQNY PHHHDADNIV SRTTTTTPNL NQDLGLSLHP  180
FQGNNINSTV VPETNNFATS HFETFGRISG WNHHDLTMTS SSSPSEQQEE QERGNGGFMV  240
NLHHHQPSMM TLLNSQQQQV FLGGQQQQQR GTLQSSLFPH SFRSWDHHHQ TTSDNHHHHH  300
HNQASPVMFA SSSQYGSHGM MMMQGLSFPI HGEEPTQPNS SSSPPNSHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-203487154Putative transcription factor PCF6
5zkt_B2e-203487154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.163110.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of heart-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Mostly detected in lateral organs, such as leaves and flowers. Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and immature siliques. {ECO:0000269|PubMed:11158442, ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009144258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144258.10.0PREDICTED: transcription factor TCP10
RefseqXP_009144259.10.0PREDICTED: transcription factor TCP10
SwissprotO822771e-148TCP10_ARATH; Transcription factor TCP10
TrEMBLM4DP400.0M4DP40_BRARP; Uncharacterized protein
STRINGBra018280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-128TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]