PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143829.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 150aa    MW: 17408.3 Da    PI: 8.0727
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.22e-4260137178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C+ad+s+ak+yhrrhkvCe+h+kapvv + gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++
  XP_009143829.1  60 ACQVERCTADMSRAKQYHRRHKVCEFHAKAPVVRIYGLHQRFCQQCSRFHDLGEFDESKRSCRRRLAGHNERRRKSAT 137
                     5**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375753.6E-577148IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.103.4E-3353122IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.04358135IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-3860138IPR004333Transcription factor, SBP-box
PfamPF031103.9E-3261134IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MCNILQMSMK GSKAEAKRSL REMSEEEEEE EEEDTFEEEE ALVKKQKGKA TSSSSSSTGA  60
CQVERCTADM SRAKQYHRRH KVCEFHAKAP VVRIYGLHQR FCQQCSRFHD LGEFDESKRS  120
CRRRLAGHNE RRRKSATEGE RSQNHGSQDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-4052134284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1181791e-108AK118179.1 Arabidopsis thaliana At2g33810 mRNA for putative squamosa-promoter binding protein, complete cds, clone: RAFL19-50-A02.
GenBankY094271e-108Y09427.1 A.thaliana mRNA for squamosa-promoter binding protein like 3.
GenBankAJ2429591e-108AJ242959.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 3 (SPL3 gene).
GenBankAJ0116331e-108AJ011633.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143829.11e-106PREDICTED: squamosa promoter-binding-like protein 3
SwissprotP930157e-59SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLM4CMN27e-99M4CMN2_BRARP; Squamosa promoter-binding-like protein
STRINGBra005470.1-P2e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.17e-55squamosa promoter binding protein-like 3