PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143303.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 223aa    MW: 24516.5 Da    PI: 6.9406
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.51.2e-2083117135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  XP_009143303.1  83 CANCDTTSTPLWRNGPSGPKSLCNACGIRFKKEER 117
                     ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.12777113IPR000679Zinc finger, GATA-type
SMARTSM004019.3E-2177129IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-1380117No hitNo description
Gene3DG3DSA:3.30.50.101.2E-1781117IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.48E-1482114No hitNo description
PROSITE patternPS00344083108IPR000679Zinc finger, GATA-type
PfamPF003203.8E-1883117IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGLSMFFSSE NDVIHHHSSP YASVDCTLSL GTPSTRLCND DDDRRFSTHT SNNISNALGS  60
WDFSHGGKKA GEGGGNNLVA RRCANCDTTS TPLWRNGPSG PKSLCNACGI RFKKEERRAS  120
AAGNSTSGGG LTAFGVPASD HHGGADYYYN NNSNNNHYYA SSSPWTHHQQ QNTQRVPYYS  180
PANNNEYSFV DDVRESHDIT TDPFLSWRLN VADRTRLVHD CTM
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout the inflorescence meristem (IM) and early stages of floral primordia. In developping flowers, restricted to the innert hree whorls, speci fi cally in the petals, stamens, and carpels. Within the stamens, mostly detected in the anther locules as well as in the vascular strands. In carpels, mainly present in ovules. {ECO:0000269|PubMed:23335616}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143303.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893730.0AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143303.11e-167PREDICTED: GATA transcription factor 19-like
RefseqXP_013665385.11e-167GATA transcription factor 19-like
SwissprotQ6QPM29e-95GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A3P5Z1G61e-165A0A3P5Z1G6_BRACM; Uncharacterized protein
TrEMBLM4D5D81e-165M4D5D8_BRARP; Uncharacterized protein
STRINGBra011695.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-83GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]