PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142064.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 199aa    MW: 22593.2 Da    PI: 6.7258
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.44.8e-3871071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC  +Cv+apyf+++q +++fa++h++FGasn +kll++lp ++r +a+ +l+yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  XP_009142064.1   7 PCGACKFLRRKCIYGCVFAPYFCHDQgASHFAAIHQVFGASNASKLLSQLPMQDRCEAAITLYYEAQARLQDPIYGCVAHIFSLQQQVVNLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     + lk++
  XP_009142064.1 102 EILKQQ 107
                     **9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6956108IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCIY GCVFAPYFCH DQGASHFAAI HQVFGASNAS KLLSQLPMQD  60
RCEAAITLYY EAQARLQDPI YGCVAHIFSL QQQVVNLQAQ LEILKQQATQ SMMTTDTPSL  120
ENPNYYRDTK LQQLQQSLDL HRHHNRHHQD RSFDTESDSD LRNIMTSYSE LDQHLNTFNQ  180
YHNGGNDVLS ASFGYISYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738481e-136AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142064.11e-149PREDICTED: LOB domain-containing protein 17
RefseqXP_013747417.11e-149PREDICTED: LOB domain-containing protein 17-like
SwissprotQ9SLB63e-99LBD17_ARATH; LOB domain-containing protein 17
TrEMBLM4DK481e-146M4DK48_BRARP; Uncharacterized protein
STRINGBra016876.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-90LBD family protein