PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141887.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 274aa    MW: 30058.3 Da    PI: 4.565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1775124356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr++  +g+WvAeIr p     +  +r +lg+f + +eAa a+++a+k+++ge
  XP_009141887.1  75 YRGVRQRT-WGKWVAEIRQP-----CrgARLWLGTFPSSYEAALAYDEAAKAMYGE 124
                     9****999.**********8.....337*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-3474137IPR001471AP2/ERF domain
CDDcd000183.11E-3074132No hitNo description
Gene3DG3DSA:3.30.730.102.1E-2874132IPR001471AP2/ERF domain
PROSITE profilePS5103220.98274131IPR001471AP2/ERF domain
PfamPF008471.5E-1375124IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1975132IPR016177DNA-binding domain
PRINTSPR003676.2E-97586IPR001471AP2/ERF domain
PRINTSPR003676.2E-997113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPSKIVVRKR KSRDGATSVA ETLNKWREDN EITEAASRND DGCLKPKPIR KAPPKGSRKG  60
CMKGKGGPEN GIWNYRGVRQ RTWGKWVAEI RQPCRGARLW LGTFPSSYEA ALAYDEAAKA  120
MYGESARLNL PDISNVSSLT TAAGSVTTLS NESEVCALED TNVKEEDGGD EYGFVKSSQC  180
VKEEMGVPDS ADTFGYGNEH EAWDFGVDEM FDVDEVMGLL DEINVSGQET TQSQDASLLG  240
SLNHMETAHP GVDCGYPIVQ PSERNNSCVD LDRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1774131260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.31210.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141887.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141887.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X1
SwissprotQ8LFR21e-107DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A397ZWT80.0A0A397ZWT8_BRACM; Uncharacterized protein
STRINGBra017011.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-98ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]