PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141347.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 141aa    MW: 16483 Da    PI: 6.6679
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.3e-4163140178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C+ad+s+ak+yh+rh+vCe+h+kap v +sgl qrfCqqCsrfhel efD++krsCrrrLa+hnerrr++++
  XP_009141347.1  63 ACQVERCTADMSRAKQYHKRHRVCEFHAKAPLVRISGLYQRFCQQCSRFHELGEFDDTKRSCRRRLAGHNERRRRNTS 140
                     5*************************************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375759.6E-561141IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.6E-3257125IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.65861138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.34E-3763139IPR004333Transcription factor, SBP-box
PfamPF031108.9E-3264137IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MSTRRSRAEG KRSLREMSEE EEEDEEDEET FEGEEDEDTS EEEAVEKKQK GKATTSSSSG  60
TGACQVERCT ADMSRAKQYH KRHRVCEFHA KAPLVRISGL YQRFCQQCSR FHELGEFDDT  120
KRSCRRRLAG HNERRRRNTS Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3855137284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.250090.0silique
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141347.13e-97PREDICTED: squamosa promoter-binding-like protein 3
SwissprotP930153e-59SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLM4DZD33e-97M4DZD3_BRARP; Squamosa promoter-binding-like protein
STRINGBra021880.1-P8e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.15e-46squamosa promoter binding protein-like 3