PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140481.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 308aa    MW: 34410.8 Da    PI: 4.5709
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140481.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.68.8e-4351041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC+++Cv+apyfp +qp+kf +vhk+FGasnv+k+l++lp+  reda++sl+yeAear+rdP+yG+vg+i+ lqq l++ +++l+
  XP_009140481.1   5 PCAACKLLRRKCTQECVFAPYFPPTQPQKFIYVHKVFGASNVTKILNDLPPPSREDAVNSLYYEAEARIRDPIYGCVGLISFLQQCLKKIQQDLV 99 
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++kee
  XP_009140481.1 100 TAKEE 104
                     99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381554.0E-1072306IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089126.6914105IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-415102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MASTPCAACK LLRRKCTQEC VFAPYFPPTQ PQKFIYVHKV FGASNVTKIL NDLPPPSRED  60
AVNSLYYEAE ARIRDPIYGC VGLISFLQQC LKKIQQDLVT AKEELAGYIG PDAVNPQQPY  120
LPPLANNPPP NFMMAMEGMP HGVVPQGEPL IMREPNMPQH QHQPQDEQMQ LMGTDAHRMA  180
AMILERGDQQ GMFNGYGIDN NGSVTATGFN QMDVNDHTSG GSMSGPSLAL GSFGDAYQMG  240
HETEHHISHD QLQTQLMLQP PLQEGQEQNE GQFLMQPMGQ ENLHEEEDEE ELEPPVKWRK  300
SESKEASY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044820.0AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence.
GenBankAC0030400.0AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankAB4738350.0AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746972.10.0PREDICTED: LOB domain-containing protein 10-like
RefseqXP_013634802.10.0PREDICTED: LOB domain-containing protein 10
RefseqXP_009140482.10.0PREDICTED: LOB domain-containing protein 10
RefseqXP_009140481.10.0PREDICTED: LOB domain-containing protein 10
RefseqXP_009140480.10.0PREDICTED: LOB domain-containing protein 10
RefseqXP_009140479.10.0PREDICTED: LOB domain-containing protein 10
SwissprotO648361e-177LBD10_ARATH; LOB domain-containing protein 10
TrEMBLA0A078DKA40.0A0A078DKA4_BRANA; BnaA07g21600D protein
TrEMBLA0A0D3C1I70.0A0A0D3C1I7_BRAOL; Uncharacterized protein
TrEMBLM4ETM10.0M4ETM1_BRARP; Uncharacterized protein
STRINGBra032153.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23660.21e-154LOB domain-containing protein 10