PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138148.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 313aa    MW: 34812.6 Da    PI: 5.0069
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.5e-18204238135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_009138148.1 204 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 238
                     99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.4E-1001294IPR016679Transcription factor, GATA, plant
SMARTSM004014.7E-18198248IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14199236IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.98E-16200262No hitNo description
PROSITE profilePS5011411.279202234IPR000679Zinc finger, GATA-type
CDDcd002023.59E-15203250No hitNo description
PfamPF003201.1E-15204238IPR000679Zinc finger, GATA-type
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEQQQLLTPD LLLVAGNSDS FVVDDLLDFS NDNGQPDDGF EPFPDSSTVS AGNLAVSSNS  60
SSLYTDGSAF SDDLCVPCED LAELEWLSNF VEESFSKEDQ DKLQLLSGSL QKPQTTGLTQ  120
THQPEPDLDQ IFILTDTDDS NVSVPAKARS KRSRSAASTW ASRLLAIAGS HEPCPKKKHH  180
KLKEHDSSGE YEVDGGEAGV ERRCLHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP  240
EYRPASSPTF VMARHSNSHR KVMELRRQKE VRDEHLLSQL RCENLLMDIR SNGDDFLIRN  300
DNNHVAPDFR HLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895650.0AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719577.10.0PREDICTED: GATA transcription factor 9-like
RefseqXP_009138148.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826321e-170GATA9_ARATH; GATA transcription factor 9
TrEMBLM4F7H60.0M4F7H6_BRARP; Uncharacterized protein
STRINGBra037037.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-155GATA transcription factor 9