PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 316aa    MW: 35269.5 Da    PI: 6.0592
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.3e-29152212259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y+WrKYGqK++ g++fprsYYrCt++   +C+++k+v+rs++dp+v+e tY+g+H+++
  XP_009137380.1 152 DDVYSWRKYGQKDILGAKFPRSYYRCTHRstqNCWATKQVQRSDSDPTVFELTYRGTHTCQ 212
                     8***************************9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.85146209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-27147213IPR003657WRKY domain
SuperFamilySSF1182906.02E-25150213IPR003657WRKY domain
SMARTSM007746.8E-38151213IPR003657WRKY domain
PfamPF031066.2E-26152212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEGQKAMLAW EQKTLQSEVS LGLEAAKKLQ ARLSEASSPS SLSSYPAAET NEILIEQILS  60
SYDKVLVMLN WSSSPPVQLT PATVAVVPVV NSGGIPESPA SINGSPRSED GGGSSESHRQ  120
DHMFNSRKRK MLPKWTEKVR ISPERGLEGP QDDVYSWRKY GQKDILGAKF PRSYYRCTHR  180
STQNCWATKQ VQRSDSDPTV FELTYRGTHT CQQGTPPPSH PPPASPEKRN TRPKLTTTAQ  240
KPNDILESLK TSLTVRTEGL DDADNVFSFP NTPPFCDFRT INDEFSSPIF DVVDWLNPTV  300
EIDPAFPTFL QESIYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-191512091674Disease resistance protein RRS1
5w3x_D6e-191512091674Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130SRKRKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.23120.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841110.0FJ384111.1 Brassica napus cultivar Westar WRKY transcription factor 53 (WRKY53) mRNA, WRKY53-2 allele, complete cds.
GenBankKC2465810.0KC246581.1 Brassica napus WRKY transcription factor 53.1 (WRKY53.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137380.10.0PREDICTED: probable WRKY transcription factor 53
SwissprotQ9SUP61e-153WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBLA0A398AP100.0A0A398AP10_BRACM; Uncharacterized protein
TrEMBLM4DB720.0M4DB72_BRARP; Uncharacterized protein
STRINGBra013732.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-138WRKY family protein
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  4. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]
  5. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]
  6. Chen X, et al.
    POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis.
    Elife, 2017.
    [PMID:27873573]
  7. Nie P, et al.
    Induced Systemic Resistance against Botrytis cinerea by Bacillus cereus AR156 through a JA/ET- and NPR1-Dependent Signaling Pathway and Activates PAMP-Triggered Immunity in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 238
    [PMID:28293243]
  8. Ren Y,Li Y,Jiang Y,Wu B,Miao Y
    Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 749-763
    [PMID:28412544]
  9. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]
  10. Crespo-Salvador Ó,Escamilla-Aguilar M,López-Cruz J,López-Rodas G,González-Bosch C
    Determination of histone epigenetic marks in Arabidopsis and tomato genes in the early response to Botrytis cinerea.
    Plant Cell Rep., 2018. 37(1): p. 153-166
    [PMID:29119291]
  11. Yuan N, et al.
    STRESS INDUCED FACTOR 2, a Leucine-Rich Repeat Kinase Regulates Basal Plant Pathogen Defense.
    Plant Physiol., 2018. 176(4): p. 3062-3080
    [PMID:29463771]