PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135706.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 191aa    MW: 21257.1 Da    PI: 9.6689
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.4e-19149185135
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+  nC++++Tp+WRrgp g+ktLCnaCG+++rk+++
  XP_009135706.1 149 CTnlNCNAIDTPMWRRGPLGPKTLCNACGIKFRKEEE 185
                     66569*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-6145191IPR000679Zinc finger, GATA-type
PfamPF003201.0E-16149185IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-10152187No hitNo description
CDDcd002029.11E-11153182No hitNo description
Gene3DG3DSA:3.30.50.101.6E-13153187IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.596153187IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEQELDLTLR LGLPSPAIET HLSLDTPPTT NQGINVDDGR RDNNAGGENH ERHTDVNMRY  60
YNLVFNHFAG IRETLNFTPF PIQPPPYSSP APTPATPTRS DYVLIDVPAR RAVRSALATR  120
NALNANANAK QRRGCGGCCG GRIGWMRKCT NLNCNAIDTP MWRRGPLGPK TLCNACGIKF  180
RKEEERRSKR S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135706.11e-141PREDICTED: GATA transcription factor 29-like
RefseqXP_009135707.11e-141PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT453e-45GAT29_ARATH; GATA transcription factor 29
TrEMBLM4CC711e-141M4CC71_BRARP; Uncharacterized protein
STRINGBra001801.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-35GATA transcription factor 29