PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 287aa    MW: 33183.1 Da    PI: 10.282
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.5e-2019111197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++ ++d +++++  +p +f+ ++ +k+  s+++++++++grsWev +  + +++  y+ ++GW++Fv +n L +++fv+F+++g ++f  +v
  XP_009135510.1  19 FFKIFHSADLSSESMRGIPYDFM-KNVSKEDFSRKMVIRTKWGRSWEVDI--SMNPRFyYMEKSGWNQFVTDNALGANEFVTFTHNGLMCF--NV 108
                     89***999***************.665677899*****************..999999566669********************9988999..66 PP

                     EEE CS
              B3  95 kvf 97 
                      ++
  XP_009135510.1 109 NIY 111
                     665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-1815118IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-1718112No hitNo description
PROSITE profilePS5086313.77519114IPR003340B3 DNA binding domain
PfamPF023626.0E-1819111IPR003340B3 DNA binding domain
SMARTSM010191.6E-2319114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-14183274IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.024185279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-11185275IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-4188279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEWNRGFGRV KEERKSLSFF KIFHSADLSS ESMRGIPYDF MKNVSKEDFS RKMVIRTKWG  60
RSWEVDISMN PRFYYMEKSG WNQFVTDNAL GANEFVTFTH NGLMCFNVNI YKESGKEIVL  120
THTTTPFSGI KNEEGERSYK DVKKEDESMG GGVGHVEIGE SSRGAALRKK KAEKHKKRKK  180
VKYGVPRFKI TITKSYLRSL PIPTFFEKRY LKSESKVYKI HHSEGDGSWE VLSLVHQAHI  240
VLSRGWVKLA REYPLAIGDR CTFHLVKPTE FVLTSKKAKA IEITISD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175179KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135510.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP63e-92Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLM4CBR70.0M4CBR7_BRARP; Uncharacterized protein
STRINGBra001647.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.12e-90B3 family protein