PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135509.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 299aa    MW: 34780.2 Da    PI: 10.1879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-1819111197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++ ++d +++++  +p +f++++ +k+  s +++++ ++g sWev +  + +++  y+ ++GW++Fv +n L e++fv+F+++g ++f  +v
  XP_009135509.1  19 FFKIFQSADLFSESMRAMPYNFMKNI-SKEDFSYKMVIRAQWGSSWEVDI--SMNPRFyYMEKSGWNQFVTDNALGENEFVTFTHKGLMRF--NV 108
                     99*********************777.466799*****************..999999566669********************9887998..66 PP

                     EEE CS
              B3  95 kvf 97 
                      ++
  XP_009135509.1 109 NIY 111
                     665 PP

2B336.67.9e-12206287993
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ++ ++ l +pkkf e++  +  esk  ++ +++g  sWev +    +  r+++++GW + +++  L +gD ++F+l++ +ef l+
  XP_009135509.1 206 TNSYLKFLAIPKKFEEAYIPD--ESKVYMIHHSEGkGSWEVLC--LVRETRTIFSSGWCRLAREYPLAAGDRCTFHLVKPDEFVLT 287
                     334445699*****9999433..44344444444449******..8888889*************************998888555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1713115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1714119IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-1518111No hitNo description
PfamPF023627.5E-1719110IPR003340B3 DNA binding domain
PROSITE profilePS5086313.0719114IPR003340B3 DNA binding domain
SMARTSM010198.8E-2119114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14196287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-17196287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.039198292IPR003340B3 DNA binding domain
CDDcd100171.39E-10199282No hitNo description
SMARTSM010194.8E-12201292IPR003340B3 DNA binding domain
PfamPF023626.6E-10203289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGWNRGFGRV KDERKNLSFF KIFQSADLFS ESMRAMPYNF MKNISKEDFS YKMVIRAQWG  60
SSWEVDISMN PRFYYMEKSG WNQFVTDNAL GENEFVTFTH KGLMRFNVNI YGKNGKEIVT  120
PRKPHTTTPF SGIKKEEDVK KEDESMGVEV EIEVEKKKRA VEVGESSRGA ALKKKKAEKP  180
KPSKKKKKMK RNKVKNGVPE FKITITNSYL KFLAIPKKFE EAYIPDESKV YMIHHSEGKG  240
SWEVLCLVRE TRTIFSSGWC RLAREYPLAA GDRCTFHLVK PDEFVLTTKK AREEITVIE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173187KKKAEKPKPSKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135509.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-109Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLM4CBR80.0M4CBR8_BRARP; Uncharacterized protein
STRINGBra001648.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.17e-97B3 family protein